PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG699600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 262aa    MW: 28804.3 Da    PI: 7.8555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG699600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12195239654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++Er RR ri +++ +L++l+P+     +k  + +++L +AveYIk+L
  Pavir.5KG699600.2.p 195 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 239
                          689*********************7....688***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15192249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-13193244No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-10195239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSCWLSTHAW IAGSWSDRRT QRFPHAELML FPFLMHAGMA PASGMGSYSQ AGTDAAMAHG  60
HRQLSSQWSF SRQDLPRISE MGMIPADIGE SIVAGGGCNS SSDGAAQSSS YLSRNFSVSS  120
WDDTNSIMFS SSPNKKPKLD AADDMVTSFS NIDSQFGLSK SSLEMPGMDD YLQLQQDSVA  180
CRVRAKRGCA THPRSIAERE RRTRISKRLK KLQDLVPNMD KQTNTSDMLD LAVEYIKELK  240
GQVEKLKHDQ ANCFCSGNQN S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.94340.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9703330.0EU970333.1 Zea mays clone 343433 mRNA sequence.
GenBankEU9728510.0EU972851.1 Zea mays clone 389073 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970931.11e-136PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1021e-49BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0A9FRS81e-140A0A0A9FRS8_ARUDO; Uncharacterized protein
STRINGSi001123m1e-134(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-48bHLH family protein